Index A | C | D | F | K | L | M | N | P | R | T A aggregate() (in module nichepca.nhood_embedding) C calc_graph_stats() (in module nichepca.graph_construction) check_for_raw_counts() (in module nichepca.utils) construct_multi_sample_graph() (in module nichepca.graph_construction) D delaunay_graph() (in module nichepca.graph_construction) distance_graph() (in module nichepca.graph_construction) F from_squidpy() (in module nichepca.graph_construction) K knn_graph() (in module nichepca.graph_construction) L leiden_multires() (in module nichepca.clustering) leiden_unique() (in module nichepca.clustering) leiden_with_nclusters() (in module nichepca.clustering) M module nichepca.clustering nichepca.graph_construction nichepca.nhood_embedding nichepca.utils nichepca.workflows N nichepca() (in module nichepca.workflows) nichepca.clustering module nichepca.graph_construction module nichepca.nhood_embedding module nichepca.utils module nichepca.workflows module normalize_per_sample() (in module nichepca.utils) P print_graph_stats() (in module nichepca.graph_construction) R remove_long_links() (in module nichepca.graph_construction) resolve_graph_constructor() (in module nichepca.graph_construction) T to_numpy() (in module nichepca.utils) to_squidpy() (in module nichepca.graph_construction) to_torch() (in module nichepca.utils)