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API
nichepca.workflows
nichepca.workflows.nichepca
nichepca.clustering
nichepca.clustering.leiden_unique
nichepca.clustering.leiden_multires
nichepca.clustering.leiden_with_nclusters
nichepca.graph_construction
nichepca.graph_construction.knn_graph
nichepca.graph_construction.delaunay_graph
nichepca.graph_construction.distance_graph
nichepca.graph_construction.construct_multi_sample_graph
nichepca.graph_construction.from_squidpy
nichepca.graph_construction.to_squidpy
nichepca.graph_construction.remove_long_links
nichepca.graph_construction.calc_graph_stats
nichepca.graph_construction.print_graph_stats
nichepca.graph_construction.resolve_graph_constructor
nichepca.nhood_embedding
nichepca.nhood_embedding.aggregate
nichepca.utils
nichepca.utils.check_for_raw_counts
nichepca.utils.normalize_per_sample
nichepca.utils.to_numpy
nichepca.utils.to_torch
Changelog
Contributing guide
References
Example notebook
.rst
.pdf
System Settings
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nichepca.nhood_embedding
nichepca.nhood_embedding
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